Mutation and immune response in colorectal cancers
Fred Hutch’s Claire Thomas, PhD, MPH, a 2024 AACR NextGen Star and postdoctoral researcher in the lab of Ulrike Peters, PhD, MPH, holder of the Fred Hutch 40th Anniversary Endowed Chair, presented a major symposium session on genetic mutations related to T cells in colorectal cancer.
The second leading cause of death globally, colorectal cancer has a number of different drivers, with 15% classified as exhibiting high microsatellite instability (MSI-high) due to deficient DNA mismatch repair (dMMR). MSI-high tumors result in the accumulation of somatic mutations which create a high neoantigen burden which in turn, elicits a strong T-cell response.
Thomas’ research was aimed at understanding the association between the MSI-high phenotype and the composition of the T-cell response in order to better inform immunotherapy treatment decision-making.
Researchers used participant data from three epidemiological studies within the Genetics and Epidemiology of Colorectal Cancer Consortium, or GECCO (housed at Fred Hutch): the Ontario Family Colon Cancer Registry, the Nurses’ Health Study and the Health Professionals Follow-Up Study.
After profiling the T-cell landscape using digital imaging, machine learning and a multiplexed immunofluorescence panel, they had 637 colorectal cancer participants available for the study. Targeted tumor sequencing classified 107 tumors as MSI-high and 106 as hypermutated. Additionally, 98 tumors were both MSI-high and hypermutated. MSI-high tumors had higher densities of epithelial-area CD4+ helper T cells, epithelial-area CD8+ cytotoxic T cells and stromal-area CD8+ cytotoxic T cells compared to MSI-low or stable tumors.
“While it is well known that T cells overall are strongly associated with MSI status in colorectal cancer, the present study improves our understanding of what specific T-cell subsets in what location in the tumor are associated with MSI and hypermutation status,” Thomas wrote in her findings.
Given the high level of T-cell infiltration in MSI-high/dMMR tumors, Thomas said they are more likely to respond favorably to immune checkpoint inhibitors, and that a “more granular understanding of specific T-cell subsets” would improve understanding of underlying biology and help inform targeted immunotherapy treatment decision-making for these tumors.
Funding for this study was provided by the National Cancer Institute.
Health disparities and H. pylori
Epidemiologist Dornell Pete, PhD, MPH, a postdoctoral researcher with Christopher Li, MD, PhD, holder of the Helen G. Edson Endowed Chair for Breast Cancer Research, presented findings from her/their research into stomach cancers among Navajo adults in the Southwest. The Navajo Nation is the largest tribe in the U.S.
Pete (she/they) conducted this research under the mentorship of Fred Hutch/University of Washington epidemiologist Amanda Phipps, PhD, MPH, and others; she/they also received an AACR Minority Scholar in Cancer Research Award to share the research at the conference.
As a member of the Navajo Nation, Pete decided to research the health burden of Helicobacter pylori, a bacterial infection that’s often acquired in childhood via person-to-person contact and is strongly linked to stomach cancers.
“Stomach cancer has been declining overall in the American Indian/Alaska Native population,” she/they said during the talk, “but there are disparities in the Southwest. The incidence in the Navajo Nation is 3.2 times higher than that of the white population of the Southwest.”
Pete dug into this disparity with the Navajo ABID Study (abid' is the Navajo word for stomach), conducting a community-based cross-sectional study in 2021. She/they gathered demographic, health and dietary information from mailed questionnaires; study participants also provided stool samples which were then analyzed for both H. pylori as well as the cagA gene, which has been linked to more gastrointestinal disease severity.
Out of nearly 100 people, Pete found nearly 60% had H. pylori infections, twice the prevalence of the U.S. white population. In addition, among those infected with H. pylori, nearly 77% tested positive for the cagA gene, four times the prevalence in white people.
Given the high burden of these infections, Pete said it’s crucial to use culturally tailored health education strategies and interventions to reduce H. pylori infections and stomach cancer risk.
“We’re working with the community to raise awareness of these findings,” she/they said. “[Getting] information back to the community is important.”
Funding for this study was provided by National Institutes of Health, the National Cancer Institute and the Tribal Researchers' Cancer Control Fellowship Research Award.